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Hendrickson lattman coefficients

WebHendrickson-Lattman coefficients Figures of merit Figures of merit. STANDARD ITEM NAMES Standard names are normally used for the following items: Name Item H, K, L … Web1 mei 2003 · Most phasing programs calculate such a probability from 0 to 360° in 10° intervals, say, to produce a phase probability distribution whose shape can be represented by four coefficients of a polynominal, the so-called Hendrickson–Lattman coefficients HLA, HLB, HLC and HLD (Hendrickson & Lattman, 1970).

HLTOFOM (CCP4: Supported Program) — CCP4Docs documentation

WebThe density_modify.inp task file can be used for phase improvement and extension by solvent flipping/flattening, density truncation and NCS averaging.The input required is observed structure factors, experimental phases (preferably Hendrickson-Lattman coefficients), and an estimate of the solvent content, i.e. the fraction of the unit cell … Web15 feb. 1970 · The Hendrickson-Lattman coefficients 29obtained were then scaled up by a factor of 3-6 using the CCP4 program SFTOOLS. This 'sharpens' the phases, or reduces the estimate of phase error supplied... blossom care solutions https://artattheplaza.net

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http://www.ysbl.york.ac.uk/~cowtan/ccp4wiki/wiki32.html WebThe experimental phase information (the Hendrickson-Lattman coefficients from MAD phasing) is included in the refinement by the use of the MLHL target. This information is also used in subsequent map calculations to reduce model bias. For an initial model with relatively large errors ... WebHendrickson-Lattman coefficients for conversion to PHI/FOM. If this argument is given, conversion is performed from HL to PHI/FOM. See Note on column paths. -colin-phifom colpath PHI/FOM for conversion to Hendrickson-Lattman coefficients. If this argument is given, conversion is performed from PHI/FOM to HL. See Note on column paths. blossom chair rental

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Hendrickson lattman coefficients

HLTOFOM (CCP4: Supported Program) — CCP4Docs documentation

Web29 apr. 2024 · The effect of density modification on the starting maps from either source is illustrated in the case of SHELXE. The different modes in which the program can run are reviewed; these include less well-known uses such as reading external phase values and weights or phase distributions encoded in Hendrickson-Lattman coefficients. WebHLA HLB HLC HLD are Hendrickson-Lattman coefficients phases-hl.export: a portable list of phases. The "phases-hl.export" file is a formatted file containing Fnative, sigma, …

Hendrickson lattman coefficients

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http://www.ysbl.york.ac.uk/~cowtan/ccp4wiki/wiki26.html WebHendrickson-Lattman coefficients are a set of 4 numbers, represented by the symbols A, B, C and D, which provide a compact description of a bimodal phase probability distribution. The phase probability given by the coefficients as a function of φ is geven by the …

WebHendrickson-Lattman coefficients for work structure. -colin-hl or -colin-phifom should be specified, but not See Note on column paths. -colin-phifom colpath Phase and figure of … WebOnce a correlation coefficient over 30% between the structure factors calculated from such a trace and the native data indicates that the structure has been solved, in all …

http://www.ysbl.york.ac.uk/~cowtan/ccp4wiki/wiki29.html WebThe incorporation of prior phase information into a maximum-likelihood formalism has been shown to strengthen model refinement. However, the currently available likelihood refinement target using prior phase information has shortcomings; the `phased' refinement target considers experimental phase information indirectly and statically in the form of …

WebHLA HLB HLC HLD are Hendrickson-Lattman coefficients phases-hl.export: a portable list of phases. The "phases-hl.export" file is a formatted file containing Fnative, sigma, phases, figure of merit, and Hendrickson-Lattman coefficients calculated using …

WebIf Hendrickson-Lattman coefficients or R-free flags are present in the reflections file(s), these will be used as well. Additional files for starting map coefficients and high-resolution data are optional. (An example of the latter would be building into an isomorphous native dataset after solving a SeMet SAD/MAD structure in AutoSol.) blossom church of christ blossom txhttp://www.ysbl.york.ac.uk/~cowtan/ccp4wiki/wiki32.html#:~:text=Hendrickson-Lattman%20coefficients%20are%20a%20set%20of%204%20numbers%2C,%2B%20C%20cos%20%282%CF%86%29%20%2B%20D%20sin%20%282%CF%86%29%29 free easter knitting patterns ukWebThe experimental phase information (the Hendrickson-Lattman coefficients from MAD phasing) is included in the refinement by the use of the MLHL target. Note that we also specify the "combined" map option for the electron density map that is calculated from the refined structure. blossom church of christWebHendrickson-Lattman coefficients for work structure. Either -colin-hl or -colin-phifom should be specified, but not both. See Note on column paths. -colin-phifom colpath … blossom care burton on trentWeb28 okt. 2014 · Some computation operators simply convert a datalist of one type to a datalist of another type. For example, you can convert a phase and weight to Hendrickson … blossom chevrolet service hoursWebHendrickson-Lattman coefficients for reference structure. If you do not have these, they can be generated using the accompanying chltofom program. See Note on column … free easter kids coloring pagesWebLike the late Professor Ewald, Hendrickson advanced the foundations of crystallography; his essential contributions include not only MAD and SAD but also his phase-encoding coefficients (Hendrickson–Lattman coefficients) and … blossom chiropractic st pete